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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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201 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AFAP1L1
ENSSSCG00000014431
ENSG00000157510
Actin filament-associated protein 1-like 1
Tissue enriched
Detected in many
lymphoid tissue:
72.8
AMTN
ENSSSCG00000008936
ENSG00000187689
Amelotin
Tissue enriched
Detected in some
lymphoid tissue:
14.9
AOAH
ENSSSCG00000016657
ENSG00000136250
Acyloxyacyl hydrolase
Tissue enriched
Detected in many
lymphoid tissue:
116.5
APBB1IP
ENSSSCG00000030156
ENSG00000077420
Amyloid beta precursor protein binding family B member 1 interacting protein
Tissue enriched
Detected in many
lymphoid tissue:
75.5
ARHGAP15
ENSSSCG00000015671
ENSG00000075884
Rho GTPase activating protein 15
Tissue enriched
Detected in many
lymphoid tissue:
58.4
ASTL
ENSSSCG00000008126
ENSG00000188886
Astacin like metalloendopeptidase
Tissue enriched
Detected in single
lymphoid tissue:
6.7
AZU1
ENSSSCG00000013415
ENSG00000172232
Azurocidin
Tissue enriched
Detected in some
bone marrow:
130.2
BCL11B
ENSSSCG00000002507
ENSG00000127152
B-cell lymphoma/leukemia 11B
Tissue enriched
Detected in many
lymphoid tissue:
85.3
CCR7
ENSSSCG00000017466
ENSG00000126353
C-C motif chemokine receptor 7
Tissue enriched
Detected in many
lymphoid tissue:
42.2
CCR9
ENSSSCG00000011316
ENSG00000173585
C-C chemokine receptor type 9
Tissue enriched
Detected in some
lymphoid tissue:
54.4
CD1D
ENSSSCG00000006452
ENSG00000158473
CD1B antigen precursor
Tissue enriched
Detected in all
lymphoid tissue:
107.9
CD1E
ENSSSCG00000006450
ENSG00000158488
T-cell surface glycoprotein CD1e, membrane-associated precursor
Tissue enriched
Detected in some
lymphoid tissue:
73.8
CD244
ENSSSCG00000006374
ENSG00000122223
CD244 molecule
Tissue enriched
Detected in some
lymphoid tissue:
43.3
CD27
ENSSSCG00000000705
ENSG00000139193
CD27 antigen precursor
Tissue enriched
Detected in many
lymphoid tissue:
73.8
CD3D
ENSSSCG00000015093
ENSG00000167286
T-cell surface glycoprotein CD3 delta chain
Tissue enriched
Detected in all
lymphoid tissue:
95.4
CD3E
ENSSSCG00000040140
ENSG00000198851
T-cell surface glycoprotein CD3 epsilon chain precursor
Tissue enriched
Detected in many
lymphoid tissue:
71.1
CD4
ENSSSCG00000000687
ENSG00000010610
CD4 molecule
Tissue enriched
Detected in many
lymphoid tissue:
100.2
CD72
ENSSSCG00000005311
ENSG00000137101
B-cell differentiation antigen CD72
Tissue enriched
Detected in many
lymphoid tissue:
34.7
CD8A
ENSSSCG00000008217
ENSG00000153563
T-cell surface glycoprotein CD8 alpha chain precursor
Tissue enriched
Detected in many
lymphoid tissue:
80.2
CD8B
ENSSSCG00000008213
ENSG00000172116,ENSG00000254126
T-cell surface glycoprotein CD8 beta chain precursor
Tissue enriched
Detected in all
lymphoid tissue:
104.7
CDH24
ENSSSCG00000002037
ENSG00000139880
Cadherin 24
Tissue enriched
Detected in many
lymphoid tissue:
60.4
CLEC17A
ENSSSCG00000013777
ENSG00000187912
C-type lectin domain containing 17A
Tissue enriched
Detected in many
lymphoid tissue:
33.0
CNR2
ENSSSCG00000027849
ENSG00000188822
Cannabinoid receptor 2
Tissue enriched
Detected in some
lymphoid tissue:
39.5
CTSW
ENSSSCG00000012970
ENSG00000172543
Cathepsin W
Tissue enriched
Detected in many
lymphoid tissue:
70.7
DCK
ENSSSCG00000008942
ENSG00000156136
Deoxycytidine kinase
Tissue enriched
Detected in all
lymphoid tissue:
117.9
DNTT
ENSSSCG00000010505
ENSG00000107447
DNA nucleotidylexotransferase
Tissue enriched
Detected in single
lymphoid tissue:
73.3
EFNA2
ENSSSCG00000038701
ENSG00000099617
Ephrin A2
Tissue enriched
Detected in many
lymphoid tissue:
27.9
ELANE
ENSSSCG00000029130
ENSG00000197561
Elastase, neutrophil expressed
Tissue enriched
Detected in many
bone marrow:
70.9
FCER2
ENSSSCG00000040377
ENSG00000104921
Low affinity immunoglobulin epsilon Fc receptor
Tissue enriched
Detected in some
lymphoid tissue:
47.0
FCRL3
ENSSSCG00000006457
ENSG00000160856
Fc receptor like 3
Tissue enriched
Detected in many
lymphoid tissue:
38.2
FCRL4
ENSSSCG00000006458
ENSG00000163518
Fc receptor like 4
Tissue enriched
Detected in some
lymphoid tissue:
36.9
FCRL6
ENSSSCG00000006397
ENSG00000181036
Fc receptor like 6
Tissue enriched
Detected in many
lymphoid tissue:
25.9
FOXP3
ENSSSCG00000012300
ENSG00000049768
Forkhead box protein P3
Tissue enriched
Detected in many
lymphoid tissue:
23.0
FUT7
ENSSSCG00000037554
ENSG00000180549
Fucosyltransferase 7
Tissue enriched
Detected in some
lymphoid tissue:
18.8
FYB1
ENSSSCG00000016855
ENSG00000082074
FYN binding protein 1
Tissue enriched
Detected in all
lymphoid tissue:
145.6
GPR82
ENSSSCG00000012254
ENSG00000171657
Probable G-protein coupled receptor 82
Tissue enriched
Detected in many
lymphoid tissue:
45.6
GSX2
ENSSSCG00000008840
ENSG00000180613
GS homeobox 2
Tissue enriched
Detected in some
lymphoid tissue:
21.0
HMOX1
ENSSSCG00000039745
ENSG00000100292
Heme oxygenase 1
Tissue enriched
Detected in many
lymphoid tissue:
118.9
IL22RA2
ENSSSCG00000004158
ENSG00000164485
Interleukin 22 receptor subunit alpha 2
Tissue enriched
Detected in some
lymphoid tissue:
18.1
IL24
ENSSSCG00000015655
ENSG00000162892
Interleukin 24
Tissue enriched
Detected in some
lymphoid tissue:
21.2
ITGA4
ENSSSCG00000016009
ENSG00000115232
Integrin subunit alpha 4
Tissue enriched
Detected in many
lymphoid tissue:
63.2
ITK
ENSSSCG00000038003
ENSG00000113263
IL2 inducible T cell kinase
Tissue enriched
Detected in many
lymphoid tissue:
43.4
LAT
ENSSSCG00000007811
ENSG00000213658
Linker for activation of T cells
Tissue enriched
Detected in all
lymphoid tissue:
71.9
LAX1
ENSSSCG00000033768
ENSG00000122188
Lymphocyte transmembrane adaptor 1
Tissue enriched
Detected in all
lymphoid tissue:
65.5
LCK
ENSSSCG00000003608
ENSG00000182866
Tyrosine-protein kinase Lck
Tissue enriched
Detected in all
lymphoid tissue:
74.8
LEF1
ENSSSCG00000009148
ENSG00000138795
Lymphoid enhancer-binding factor 1
Tissue enriched
Detected in many
lymphoid tissue:
206.1
LTB
ENSSSCG00000001405
ENSG00000227507
Lymphotoxin-beta
Tissue enriched
Detected in many
lymphoid tissue:
56.3
LY9
ENSSSCG00000006375
ENSG00000122224
Lymphocyte antigen 9
Tissue enriched
Detected in many
lymphoid tissue:
54.7
MMP12
ENSSSCG00000014987
ENSG00000262406
Macrophage metalloelastase precursor
Tissue enriched
Detected in some
lymphoid tissue:
35.0
MPO
ENSSSCG00000017637
ENSG00000005381
Myeloperoxidase
Tissue enriched
Detected in some
bone marrow:
70.8
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